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reference strain tigr4  (ATCC)


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    ATCC reference strain tigr4
    Reference Strain Tigr4, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 182 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/reference strain tigr4/product/ATCC
    Average 95 stars, based on 182 article reviews
    reference strain tigr4 - by Bioz Stars, 2026-03
    95/100 stars

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    Maximum-likelihood core SNV unrooted phylogenetic tree of 190 Streptococcus pneumoniae serotype 4 isolates collected from patients in Alberta, Canada, 2010–2018. A total of 3,097 sites were used in the phylogeny, and 80.7% of the core genome was included. S. pneumoniae <t>TIGR4</t> (arrow; National Center for Biotechnology Information accession number NC_003028.3) was used as a mapping reference. Cluster analysis did not group 1 ST205 isolate and TIGR4 with the other clade C strains. SNV, single nucleotide variant; ST, sequence type.
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    strain relevant genotypea reference s pneumoniae tigr4 atcc baa 334 tettelin  (ATCC)
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    Maximum-likelihood core SNV unrooted phylogenetic tree of 190 Streptococcus pneumoniae serotype 4 isolates collected from patients in Alberta, Canada, 2010–2018. A total of 3,097 sites were used in the phylogeny, and 80.7% of the core genome was included. S. pneumoniae <t>TIGR4</t> (arrow; National Center for Biotechnology Information accession number NC_003028.3) was used as a mapping reference. Cluster analysis did not group 1 ST205 isolate and TIGR4 with the other clade C strains. SNV, single nucleotide variant; ST, sequence type.
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    Maximum-likelihood core SNV unrooted phylogenetic tree of 190 Streptococcus pneumoniae serotype 4 isolates collected from patients in Alberta, Canada, 2010–2018. A total of 3,097 sites were used in the phylogeny, and 80.7% of the core genome was included. S. pneumoniae TIGR4 (arrow; National Center for Biotechnology Information accession number NC_003028.3) was used as a mapping reference. Cluster analysis did not group 1 ST205 isolate and TIGR4 with the other clade C strains. SNV, single nucleotide variant; ST, sequence type.

    Journal: Emerging Infectious Diseases

    Article Title: Whole-Genome Analysis of Streptococcus pneumoniae Serotype 4 Causing Outbreak of Invasive Pneumococcal Disease, Alberta, Canada

    doi: 10.3201/eid2707.204403

    Figure Lengend Snippet: Maximum-likelihood core SNV unrooted phylogenetic tree of 190 Streptococcus pneumoniae serotype 4 isolates collected from patients in Alberta, Canada, 2010–2018. A total of 3,097 sites were used in the phylogeny, and 80.7% of the core genome was included. S. pneumoniae TIGR4 (arrow; National Center for Biotechnology Information accession number NC_003028.3) was used as a mapping reference. Cluster analysis did not group 1 ST205 isolate and TIGR4 with the other clade C strains. SNV, single nucleotide variant; ST, sequence type.

    Article Snippet: Although another ST205 isolate from Edmonton and the TIGR4 reference strain (National Center for Biotechnology Information accession no. NC_003028.3) were proximal to clade C in the phylogenetic tree, ClusterPicker excluded them from the clade based on the clustering thresholds used.

    Techniques: Variant Assay, Sequencing